scikit-allel - Explore and analyse genetic variation¶
This package provides utility functions for working with large scale genetic variation data using numpy, scipy and other established Python scientific libraries.
This package is in an early stage of development, if you have any questions please email Alistair Miles <alimanfoo@googlemail.com>.
- GitHub repository: https://github.com/cggh/scikit-allel
Installation¶
This package requires numpy, scipy, matplotlib, pandas, h5py, numexpr and bcolz. Install dependencies first, then:
$ pip install -U scikit-allel
Acknowledgments¶
Development of this package is supported by the MRC Centre for Genomics and Global Health.