scikit-allel - Explore and analyse genetic variation¶
This package provides utilities for working with large scale genetic variation data using numpy, scipy and other established Python scientific libraries.
- GitHub repository: https://github.com/cggh/scikit-allel
- Documentation: http://scikit-allel.readthedocs.org/
- Download: https://pypi.python.org/pypi/scikit-allel
This package is in an early stage of development, if you have any questions please email Alistair Miles <alimanfoo@googlemail.com>.
Installation¶
This package requires numpy, scipy, matplotlib, pandas, scikit-learn, h5py, numexpr, bcolz and petl. Install these dependencies first, then use pip to install scikit-allel:
$ pip install -U scikit-allel
Acknowledgments¶
Development of this package is supported by the MRC Centre for Genomics and Global Health.