scikit-allel - Explore and analyse genetic variation¶
This package provides utilities for exploratory analysis of large scale genetic variation data. It is based on numpy, scipy and other established Python scientific libraries.
- GitHub repository: https://github.com/cggh/scikit-allel
- Documentation: http://scikit-allel.readthedocs.org/
- Download: https://pypi.python.org/pypi/scikit-allel
If you have any questions, find a bug, or would like to suggest a feature, please raise an issue on GitHub.
This site provides reference documentation for scikit-allel. For worked examples with real data, see the following articles:
Installation¶
This package requires numpy, scipy, matplotlib, seaborn, pandas, scikit-learn, h5py, numexpr, bcolz and petl. Install these dependencies first, then use pip to install scikit-allel:
$ pip install -U scikit-allel
Acknowledgments¶
Development of this package is supported by the MRC Centre for Genomics and Global Health.